Practical Guide To Cluster Analysis In R

Practical Guide to Cluster Analysis in R PDF
Author: Alboukadel Kassambara
Publisher: STHDA
Format: PDF, Docs
Category : Cluster analysis
Languages : en
Pages : 187
View: 7315
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Book Description: Although there are several good books on unsupervised machine learning, we felt that many of them are too theoretical. This book provides practical guide to cluster analysis, elegant visualization and interpretation. It contains 5 parts. Part I provides a quick introduction to R and presents required R packages, as well as, data formats and dissimilarity measures for cluster analysis and visualization. Part II covers partitioning clustering methods, which subdivide the data sets into a set of k groups, where k is the number of groups pre-specified by the analyst. Partitioning clustering approaches include: K-means, K-Medoids (PAM) and CLARA algorithms. In Part III, we consider hierarchical clustering method, which is an alternative approach to partitioning clustering. The result of hierarchical clustering is a tree-based representation of the objects called dendrogram. In this part, we describe how to compute, visualize, interpret and compare dendrograms. Part IV describes clustering validation and evaluation strategies, which consists of measuring the goodness of clustering results. Among the chapters covered here, there are: Assessing clustering tendency, Determining the optimal number of clusters, Cluster validation statistics, Choosing the best clustering algorithms and Computing p-value for hierarchical clustering. Part V presents advanced clustering methods, including: Hierarchical k-means clustering, Fuzzy clustering, Model-based clustering and Density-based clustering.


An Introduction To Clustering With R

An Introduction to Clustering with R PDF
Author: Paolo Giordani
Publisher: Springer Nature
Format: PDF, ePub, Mobi
Category : Mathematics
Languages : en
Pages : 340
View: 1537
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Book Description: The purpose of this book is to thoroughly prepare the reader for applied research in clustering. Cluster analysis comprises a class of statistical techniques for classifying multivariate data into groups or clusters based on their similar features. Clustering is nowadays widely used in several domains of research, such as social sciences, psychology, and marketing, highlighting its multidisciplinary nature. This book provides an accessible and comprehensive introduction to clustering and offers practical guidelines for applying clustering tools by carefully chosen real-life datasets and extensive data analyses. The procedures addressed in this book include traditional hard clustering methods and up-to-date developments in soft clustering. Attention is paid to practical examples and applications through the open source statistical software R. Commented R code and output for conducting, step by step, complete cluster analyses are available. The book is intended for researchers interested in applying clustering methods. Basic notions on theoretical issues and on R are provided so that professionals as well as novices with little or no background in the subject will benefit from the book.


Practical Guide To Principal Component Methods In R

Practical Guide To Principal Component Methods in R PDF
Author: Alboukadel KASSAMBARA
Publisher: STHDA
Format: PDF, Mobi
Category :
Languages : en
Pages : 169
View: 6689
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Book Description: Although there are several good books on principal component methods (PCMs) and related topics, we felt that many of them are either too theoretical or too advanced. This book provides a solid practical guidance to summarize, visualize and interpret the most important information in a large multivariate data sets, using principal component methods in R. The visualization is based on the factoextra R package that we developed for creating easily beautiful ggplot2-based graphs from the output of PCMs. This book contains 4 parts. Part I provides a quick introduction to R and presents the key features of FactoMineR and factoextra. Part II describes classical principal component methods to analyze data sets containing, predominantly, either continuous or categorical variables. These methods include: Principal Component Analysis (PCA, for continuous variables), simple correspondence analysis (CA, for large contingency tables formed by two categorical variables) and Multiple CA (MCA, for a data set with more than 2 categorical variables). In Part III, you'll learn advanced methods for analyzing a data set containing a mix of variables (continuous and categorical) structured or not into groups: Factor Analysis of Mixed Data (FAMD) and Multiple Factor Analysis (MFA). Part IV covers hierarchical clustering on principal components (HCPC), which is useful for performing clustering with a data set containing only categorical variables or with a mixed data of categorical and continuous variables.


R In Action

R in Action PDF
Author: Robert I. Kabacoff
Publisher: Simon and Schuster
Format: PDF
Category : Computers
Languages : en
Pages : 970
View: 1981
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Book Description: Summary R in Action, Second Edition presents both the R language and the examples that make it so useful for business developers. Focusing on practical solutions, the book offers a crash course in statistics and covers elegant methods for dealing with messy and incomplete data that are difficult to analyze using traditional methods. You'll also master R's extensive graphical capabilities for exploring and presenting data visually. And this expanded second edition includes new chapters on time series analysis, cluster analysis, and classification methodologies, including decision trees, random forests, and support vector machines. Purchase of the print book includes a free eBook in PDF, Kindle, and ePub formats from Manning Publications. About the Technology Business pros and researchers thrive on data, and R speaks the language of data analysis. R is a powerful programming language for statistical computing. Unlike general-purpose tools, R provides thousands of modules for solving just about any data-crunching or presentation challenge you're likely to face. R runs on all important platforms and is used by thousands of major corporations and institutions worldwide. About the Book R in Action, Second Edition teaches you how to use the R language by presenting examples relevant to scientific, technical, and business developers. Focusing on practical solutions, the book offers a crash course in statistics, including elegant methods for dealing with messy and incomplete data. You'll also master R's extensive graphical capabilities for exploring and presenting data visually. And this expanded second edition includes new chapters on forecasting, data mining, and dynamic report writing. What's Inside Complete R language tutorial Using R to manage, analyze, and visualize data Techniques for debugging programs and creating packages OOP in R Over 160 graphs About the Author Dr. Rob Kabacoff is a seasoned researcher and teacher who specializes in data analysis. He also maintains the popular Quick-R website at statmethods.net. Table of Contents PART 1 GETTING STARTED Introduction to R Creating a dataset Getting started with graphs Basic data management Advanced data management PART 2 BASIC METHODS Basic graphs Basic statistics PART 3 INTERMEDIATE METHODS Regression Analysis of variance Power analysis Intermediate graphs Resampling statistics and bootstrapping PART 4 ADVANCED METHODS Generalized linear models Principal components and factor analysis Time series Cluster analysis Classification Advanced methods for missing data PART 5 EXPANDING YOUR SKILLS Advanced graphics with ggplot2 Advanced programming Creating a package Creating dynamic reports Advanced graphics with the lattice package available online only from manning.com/kabacoff2


Cluster Analysis

Cluster Analysis PDF
Author: Brian S. Everitt
Publisher: John Wiley & Sons
Format: PDF, Docs
Category : Mathematics
Languages : en
Pages : 302
View: 7056
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Book Description: Cluster analysis comprises a range of methods for classifying multivariate data into subgroups. By organizing multivariate data into such subgroups, clustering can help reveal the characteristics of any structure or patterns present. These techniques have proven useful in a wide range of areas such as medicine, psychology, market research and bioinformatics. This fifth edition of the highly successful Cluster Analysis includes coverage of the latest developments in the field and a new chapter dealing with finite mixture models for structured data. Real life examples are used throughout to demonstrate the application of the theory, and figures are used extensively to illustrate graphical techniques. The book is comprehensive yet relatively non-mathematical, focusing on the practical aspects of cluster analysis. Key Features: Presents a comprehensive guide to clustering techniques, with focus on the practical aspects of cluster analysis Provides a thorough revision of the fourth edition, including new developments in clustering longitudinal data and examples from bioinformatics and gene studies./li> Updates the chapter on mixture models to include recent developments and presents a new chapter on mixture modeling for structured data Practitioners and researchers working in cluster analysis and data analysis will benefit from this book.


Machine Learning Essentials

Machine Learning Essentials PDF
Author: Alboukadel Kassambara
Publisher: STHDA
Format: PDF
Category :
Languages : en
Pages : 209
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Book Description: Discovering knowledge from big multivariate data, recorded every days, requires specialized machine learning techniques. This book presents an easy to use practical guide in R to compute the most popular machine learning methods for exploring real word data sets, as well as, for building predictive models. The main parts of the book include: A) Unsupervised learning methods, to explore and discover knowledge from a large multivariate data set using clustering and principal component methods. You will learn hierarchical clustering, k-means, principal component analysis and correspondence analysis methods. B) Regression analysis, to predict a quantitative outcome value using linear regression and non-linear regression strategies. C) Classification techniques, to predict a qualitative outcome value using logistic regression, discriminant analysis, naive bayes classifier and support vector machines. D) Advanced machine learning methods, to build robust regression and classification models using k-nearest neighbors methods, decision tree models, ensemble methods (bagging, random forest and boosting). E) Model selection methods, to select automatically the best combination of predictor variables for building an optimal predictive model. These include, best subsets selection methods, stepwise regression and penalized regression (ridge, lasso and elastic net regression models). We also present principal component-based regression methods, which are useful when the data contain multiple correlated predictor variables. F) Model validation and evaluation techniques for measuring the performance of a predictive model. G) Model diagnostics for detecting and fixing a potential problems in a predictive model. The book presents the basic principles of these tasks and provide many examples in R. This book offers solid guidance in data mining for students and researchers. Key features: - Covers machine learning algorithm and implementation - Key mathematical concepts are presented - Short, self-contained chapters with practical examples.


Bayesian Statistics The Fun Way

Bayesian Statistics the Fun Way PDF
Author: Will Kurt
Publisher: No Starch Press
Format: PDF, ePub, Mobi
Category : Mathematics
Languages : en
Pages : 258
View: 4736
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Book Description: Fun guide to learning Bayesian statistics and probability through unusual and illustrative examples. Probability and statistics are increasingly important in a huge range of professions. But many people use data in ways they don't even understand, meaning they aren't getting the most from it. Bayesian Statistics the Fun Way will change that. This book will give you a complete understanding of Bayesian statistics through simple explanations and un-boring examples. Find out the probability of UFOs landing in your garden, how likely Han Solo is to survive a flight through an asteroid shower, how to win an argument about conspiracy theories, and whether a burglary really was a burglary, to name a few examples. By using these off-the-beaten-track examples, the author actually makes learning statistics fun. And you'll learn real skills, like how to: - How to measure your own level of uncertainty in a conclusion or belief - Calculate Bayes theorem and understand what it's useful for - Find the posterior, likelihood, and prior to check the accuracy of your conclusions - Calculate distributions to see the range of your data - Compare hypotheses and draw reliable conclusions from them Next time you find yourself with a sheaf of survey results and no idea what to do with them, turn to Bayesian Statistics the Fun Way to get the most value from your data.


R For Political Data Science

R for Political Data Science PDF
Author: Francisco Urdinez
Publisher: CRC Press
Format: PDF, Mobi
Category : Political Science
Languages : en
Pages : 469
View: 2896
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Book Description: R for Political Data Science: A Practical Guide is a handbook for political scientists new to R who want to learn the most useful and common ways to interpret and analyze political data. It was written by political scientists, thinking about the many real-world problems faced in their work. The book has 16 chapters and is organized in three sections. The first, on the use of R, is for those users who are learning R or are migrating from another software. The second section, on econometric models, covers OLS, binary and survival models, panel data, and causal inference. The third section is a data science toolbox of some the most useful tools in the discipline: data imputation, fuzzy merge of large datasets, web mining, quantitative text analysis, network analysis, mapping, spatial cluster analysis, and principal component analysis. Key features: Each chapter has the most up-to-date and simple option available for each task, assuming minimal prerequisites and no previous experience in R Makes extensive use of the Tidyverse, the group of packages that has revolutionized the use of R Provides a step-by-step guide that you can replicate using your own data Includes exercises in every chapter for course use or self-study Focuses on practical-based approaches to statistical inference rather than mathematical formulae Supplemented by an R package, including all data As the title suggests, this book is highly applied in nature, and is designed as a toolbox for the reader. It can be used in methods and data science courses, at both the undergraduate and graduate levels. It will be equally useful for a university student pursuing a PhD, political consultants, or a public official, all of whom need to transform their datasets into substantive and easily interpretable conclusions.


Handbook Of Cluster Analysis

Handbook of Cluster Analysis PDF
Author: Christian Hennig
Publisher: CRC Press
Format: PDF, ePub, Docs
Category : Business & Economics
Languages : en
Pages : 753
View: 7032
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Book Description: Handbook of Cluster Analysis provides a comprehensive and unified account of the main research developments in cluster analysis. Written by active, distinguished researchers in this area, the book helps readers make informed choices of the most suitable clustering approach for their problem and make better use of existing cluster analysis tools.The


Cluster Analysis And Data Mining

Cluster Analysis and Data Mining PDF
Author: Ronald S. King
Publisher: Mercury Learning and Information
Format: PDF, Mobi
Category : Computers
Languages : en
Pages : 300
View: 4324
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Book Description: Cluster analysis is used in data mining and is a common technique for statistical data analysis used in many fields of study, such as the medical & life sciences, behavioral & social sciences, engineering, and in computer science. Designed for training industry professionals or for a course on clustering and classification, it can also be used as a companion text for applied statistics. No previous experience in clustering or data mining is assumed. Informal algorithms for clustering data and interpreting results are emphasized. In order to evaluate the results of clustering and to explore data, graphical methods and data structures are used for representing data. Throughout the text, examples and references are provided, in order to enable the material to be comprehensible for a diverse audience. A companion disc includes numerous appendices with programs, data, charts, solutions, etc. eBook Customers: Companion files are available for downloading with order number/proof of purchase by writing to the publisher at [email protected]. FEATURES *Places emphasis on illustrating the underlying logic in making decisions during the cluster analysis *Discusses the related applications of statistic, e.g., Ward’s method (ANOVA), JAN (regression analysis & correlational analysis), cluster validation (hypothesis testing, goodness-of-fit, Monte Carlo simulation, etc.) *Contains separate chapters on JAN and the clustering of categorical data *Includes a companion disc with solutions to exercises, programs, data sets, charts, etc.


Practical Machine Learning In R

Practical Machine Learning in R PDF
Author: Fred Nwanganga
Publisher: John Wiley & Sons
Format: PDF, ePub, Docs
Category : Computers
Languages : en
Pages : 464
View: 5137
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Book Description: Guides professionals and students through the rapidly growing field of machine learning with hands-on examples in the popular R programming language Machine learning—a branch of Artificial Intelligence (AI) which enables computers to improve their results and learn new approaches without explicit instructions—allows organizations to reveal patterns in their data and incorporate predictive analytics into their decision-making process. Practical Machine Learning in R provides a hands-on approach to solving business problems with intelligent, self-learning computer algorithms. Bestselling author and data analytics experts Fred Nwanganga and Mike Chapple explain what machine learning is, demonstrate its organizational benefits, and provide hands-on examples created in the R programming language. A perfect guide for professional self-taught learners or students in an introductory machine learning course, this reader-friendly book illustrates the numerous real-world business uses of machine learning approaches. Clear and detailed chapters cover data wrangling, R programming with the popular RStudio tool, classification and regression techniques, performance evaluation, and more. Explores data management techniques, including data collection, exploration and dimensionality reduction Covers unsupervised learning, where readers identify and summarize patterns using approaches such as apriori, eclat and clustering Describes the principles behind the Nearest Neighbor, Decision Tree and Naive Bayes classification techniques Explains how to evaluate and choose the right model, as well as how to improve model performance using ensemble methods such as Random Forest and XGBoost Practical Machine Learning in R is a must-have guide for business analysts, data scientists, and other professionals interested in leveraging the power of AI to solve business problems, as well as students and independent learners seeking to enter the field.


Modern Statistics With R

Modern Statistics with R PDF
Author: Måns Thulin
Publisher: BoD - Books on Demand
Format: PDF, ePub
Category : Mathematics
Languages : en
Pages : 598
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Book Description: The past decades have transformed the world of statistical data analysis, with new methods, new types of data, and new computational tools. The aim of Modern Statistics with R is to introduce you to key parts of the modern statistical toolkit. It teaches you: - Data wrangling - importing, formatting, reshaping, merging, and filtering data in R. - Exploratory data analysis - using visualisation and multivariate techniques to explore datasets. - Statistical inference - modern methods for testing hypotheses and computing confidence intervals. - Predictive modelling - regression models and machine learning methods for prediction, classification, and forecasting. - Simulation - using simulation techniques for sample size computations and evaluations of statistical methods. - Ethics in statistics - ethical issues and good statistical practice. - R programming - writing code that is fast, readable, and free from bugs. Starting from the very basics, Modern Statistics with R helps you learn R by working with R. Topics covered range from plotting data and writing simple R code to using cross-validation for evaluating complex predictive models and using simulation for sample size determination. The book includes more than 200 exercises with fully worked solutions. Some familiarity with basic statistical concepts, such as linear regression, is assumed. No previous programming experience is needed.


A Beginner S Guide To R

A Beginner s Guide to R PDF
Author: Alain Zuur
Publisher: Springer Science & Business Media
Format: PDF
Category : Computers
Languages : en
Pages : 228
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Book Description: Based on their extensive experience with teaching R and statistics to applied scientists, the authors provide a beginner's guide to R. To avoid the difficulty of teaching R and statistics at the same time, statistical methods are kept to a minimum. The text covers how to download and install R, import and manage data, elementary plotting, an introduction to functions, advanced plotting, and common beginner mistakes. This book contains everything you need to know to get started with R.


R Graphics Essentials For Great Data Visualization

R Graphics Essentials for Great Data Visualization PDF
Author: Alboukadel Kassambara
Publisher: STHDA
Format: PDF, Docs
Category : Computers
Languages : en
Pages : 153
View: 5123
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Book Description: Data visualization is one of the most important part of data science. Many books and courses present a catalogue of graphics but they don't teach you which charts to use according to the type of the data. In this book, we start by presenting the key graphic systems and packages available in R, including R base graphs, lattice and ggplot2 plotting systems. Next, we provide more than 200 practical examples to create great graphics for the right data using either the ggplot2 package and extensions or the traditional R graphics. With this book, you 'll learn: - How to quickly create beautiful graphics using ggplot2 packages - How to properly customize and annotate the plots - Type of graphics for visualizing categorical and continuous variables - How to add automatically p-values to box plots, bar plots and alternatives - How to add marginal density plots and correlation coefficients to scatter plots - Key methods for analyzing and visualizing multivariate data - R functions and packages for plotting time series data - How to combine multiple plots on one page to create production-quality figures.


Cluster Analysis For Applications

Cluster Analysis for Applications PDF
Author: Michael R. Anderberg
Publisher: Academic Press
Format: PDF, ePub
Category : Mathematics
Languages : en
Pages : 376
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Book Description: Cluster Analysis for Applications deals with methods and various applications of cluster analysis. Topics covered range from variables and scales to measures of association among variables and among data units. Conceptual problems in cluster analysis are discussed, along with hierarchical and non-hierarchical clustering methods. The necessary elements of data analysis, statistics, cluster analysis, and computer implementation are integrated vertically to cover the complete path from raw data to a finished analysis. Comprised of 10 chapters, this book begins with an introduction to the subject of cluster analysis and its uses as well as category sorting problems and the need for cluster analysis algorithms. The next three chapters give a detailed account of variables and association measures, with emphasis on strategies for dealing with problems containing variables of mixed types. Subsequent chapters focus on the central techniques of cluster analysis with particular reference to computational considerations; interpretation of clustering results; and techniques and strategies for making the most effective use of cluster analysis. The final chapter suggests an approach for the evaluation of alternative clustering methods. The presentation is capped with a complete set of implementing computer programs listed in the Appendices to make the use of cluster analysis as painless and free of mechanical error as is possible. This monograph is intended for students and workers who have encountered the notion of cluster analysis.


Conducting Personal Network Research

Conducting Personal Network Research PDF
Author: Christopher McCarty
Publisher: Guilford Publications
Format: PDF, ePub
Category : Social Science
Languages : en
Pages : 293
View: 6306
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Book Description: Written at an introductory level, and featuring engaging case examples, this book reviews the theory and practice of personal and egocentric network research. This approach offers powerful tools for capturing the impact of overlapping, changing social relationships and contexts on individuals' attitudes and behavior. The authors provide solid guidance on the formulation of research questions; research design; data collection, including decisions about survey modes and sampling frames; the measurement of network composition and structure, including the use of name generators; and statistical modeling, from basic regression techniques to more advanced multilevel and dynamic models. Ethical issues in personal network research are addressed. User-friendly features include boxes on major published studies, end-of-chapter suggestions for further reading, and an appendix describing the main software programs used in the field.


Practical Statistics In R For Comparing Groups

Practical Statistics in R for Comparing Groups PDF
Author: Alboukadel Kassambara
Publisher:
Format: PDF, Mobi
Category :
Languages : en
Pages : 206
View: 914
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Book Description: This R Statistics book provides a solid step-by-step practical guide to statistical inference for comparing groups means using the R software. Additionally, we developed an R package named rstatix, which provides a simple and intuitive pipe-friendly framework, coherent with the `tidyverse` design philosophy, for computing the most common R statistical analyses, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses, outliers identification and more. This book is designed to get you doing the statistical tests in R as quick as possible. The book focuses on implementation and understanding of the methods, without having to struggle through pages of mathematical proofs. You will be guided through the steps of summarizing and visualizing the data, checking the assumptions and performing statistical tests in R, interpreting and reporting the results. The main parts of the book include: PART I. Statistical tests and assumptions for the comparison of groups means; PART II. comparing two means (t-test, Wilcoxon test, Sign test); PART III. comparing multiple means (ANOVA - Analysis of Variance for independent measures, repeated measures ANOVA, mixed ANOVA, ANCOVA and MANOVA, Kruskal-Wallis test and Friedman test).


Cluster Analysis

Cluster Analysis PDF
Author: Brian S. Everitt
Publisher:
Format: PDF, ePub, Docs
Category :
Languages : en
Pages : 122
View: 4023
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Book Description:


Numerical Ecology With R

Numerical Ecology with R PDF
Author: Daniel Borcard
Publisher: Springer
Format: PDF, Kindle
Category : Mathematics
Languages : en
Pages : 435
View: 3658
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Book Description: This new edition of Numerical Ecology with R guides readers through an applied exploration of the major methods of multivariate data analysis, as seen through the eyes of three ecologists. It provides a bridge between a textbook of numerical ecology and the implementation of this discipline in the R language. The book begins by examining some exploratory approaches. It proceeds logically with the construction of the key building blocks of most methods, i.e. association measures and matrices, and then submits example data to three families of approaches: clustering, ordination and canonical ordination. The last two chapters make use of these methods to explore important and contemporary issues in ecology: the analysis of spatial structures and of community diversity. The aims of methods thus range from descriptive to explanatory and predictive and encompass a wide variety of approaches that should provide readers with an extensive toolbox that can address a wide palette of questions arising in contemporary multivariate ecological analysis. The second edition of this book features a complete revision to the R code and offers improved procedures and more diverse applications of the major methods. It also highlights important changes in the methods and expands upon topics such as multiple correspondence analysis, principal response curves and co-correspondence analysis. New features include the study of relationships between species traits and the environment, and community diversity analysis. This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. Users are invited to use this book as a teaching companion at the computer. All the necessary data files, the scripts used in the chapters, as well as extra R functions and packages written by the authors of the book, are available online (URL: http://adn.biol.umontreal.ca/~numericalecology/numecolR/).


Practical Graph Mining With R

Practical Graph Mining with R PDF
Author: Nagiza F. Samatova
Publisher: CRC Press
Format: PDF, ePub, Mobi
Category : Business & Economics
Languages : en
Pages : 495
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Book Description: Discover Novel and Insightful Knowledge from Data Represented as a GraphPractical Graph Mining with R presents a "do-it-yourself" approach to extracting interesting patterns from graph data. It covers many basic and advanced techniques for the identification of anomalous or frequently recurring patterns in a graph, the discovery of groups or cluste